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Bibliography

1
J. Challacombe, A. Rechtsteiner, R. Gottardo, L.M. Rocha, E.P. Brown, T. Shenk, M. Altherr, and T. Brettin.
Evaluation of the host transcriptional response to human cytomegalovirus infection.
Physiological Genomics., 10.1152/physiolgenomics.00155.2003 (in press), 2004.

2
S. Deerwester, S.T. Dumais, G. W. Furnas, T. K. Landauer, and R. Harshman.
Indexing by Latent Semantic Analysis.
Journal of the American Society for Information Science, 41(6):391-407, 1990.

3
A. Rechtsteiner, R. Gottardo, L.M. Rocha, and M.E. Wall.
Singular Value Decomposition for analysis of gene expression.
In R. Spang, P. Beziat, and M. Vingron, editors, Currents in Computational Molecular Biology. Proceedings of the The Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB 2003), pages 275-276, Berlin, 2003.

4
A. Rechtsteiner and L.M. Rocha.
MeSH key terms for validation and annotation of gene expression clusters.
In A. Gramada and Philip E. Bourne, editors, Currents in Computational Molecular Biology. Proceedings of the Eight Annual International Conference on Research in Computational Molecular Biology (RECOMB 2004), pages 212-213, 2004.

5
Luis M. Rocha.
Semi-metric behavior in document networks and its application to recommendation systems.
In Vincenzo Loia, editor, Soft Computing Agents: A New Perspective for Dynamic Information Systems, pages 137-163. IOS Press, 2002.

6
K. Verspoor, J. Cohn, C. Joslyn, S. Mniszewski, A. Rechtsteiner, L.M. Rocha, and T. Simas.
Protein annotation as term categorization in the gene ontology using word proximity networks.
BMC Bioinformatics, 2004 (in Press).

7
M.E. Wall, A. Rechtsteiner, and L.M. Rocha.
Singular Value Decomposition and Principal Component Analysis.
In D.P. Berrar, W. Dubitzky, and M. Granzow, editors, A Practical Approach to Microarray Data Analysis, pages 91-109, Boston, MA, 2003. Kluwer Academic Publishers.


Andreas Rechtsteiner 2004-06-28